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Computing the Rearrangement Distance of Natural Genomes.

Active and repressed biosynthetic gene clusters have spatially distinct chromosome states.

Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants

Horizontal Gene Transfer Phylogenetics: A Model-Based Approach

GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data

Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes

New Genome Similarity Measures based on Conserved Gene Adjacencies

The gene family-free median of three

The gene family-free median of three

Gene family-free genome comparison