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A Draft Human Pangenome Reference

Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination

Small parsimony for natural genomes in the DCJ-indel model

The potential of family-free rearrangements towards gene orthology inference

Computing the Rearrangement Distance of Natural Genomes.

Active and repressed biosynthetic gene clusters have spatially distinct chromosome states.

Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants

Horizontal Gene Transfer Phylogenetics: A Model-Based Approach

GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data

Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes