Daniel Doerr

Latest

• A Draft Human Pangenome Reference
• Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination
• Small parsimony for natural genomes in the DCJ-indel model
• The potential of family-free rearrangements towards gene orthology inference
• Computing the Rearrangement Distance of Natural Genomes.
• Active and repressed biosynthetic gene clusters have spatially distinct chromosome states.
• Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
• Computing the Rearrangement Distance of Natural Genomes
• A Perspective on Comparative and Functional Genomics
• Family-Free Genome Comparison
• GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data
• Sequence-Based Synteny Analysis of Multiple Large Genomes
• Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes
• Finding Teams in Graphs and Its Application to Spatial Gene Cluster Discovery
• New Genome Similarity Measures based on Conserved Gene Adjacencies
• The gene family-free median of three
• The gene family-free median of three
• New genome similarity measures based on conserved gene adjacencies
• Identifying gene clusters by discovering common intervals in indeterminate strings
• Orthology detection combining clustering and synteny for very large datasets
• The potential of family-free genome comparison
• Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains
• Gene family assignment-free comparative genomics
• Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions